ShotgunMG

This is the ShotgunMG home page.

The ShotgunMG project holds in two code repositories:

• Now available as a Nextflow pipeline! .

• CentOS 7 Docker image with a functional implementation of the pipelne .
• One holding the code of the pipeline wrapper .
• One for the scripts it relies on.
• An additional repository contains the Third software packages module install scripts.
• The ShotgunMG user guide v1.3.0.
• The ShotgunMG user guide v1.3.1.
• The ShotgunMG user guide v1.3.2.

Diagram of ShotgunMG pipeline - all steps.

Diagram of ShotgunMG pipeline - only steps 1 to 6.

Preprint of the manuscript describing (among others) the pipeline methodology.