Categories

• Test 1
• pipelines 1
• academia 2
• data_science 1
• microbiome 3
• software_installation 1
• publications 3
• pipelines, publications 1
• Data vizualization 1
• Metagenomics, pipelines, publications 1
• Metagenomics, pipelines, 1

Test

• This is a test.

pipelines

• Pacbio hgap3 pipeline

academia

• Academic flaws 2
• Academic flaws 1

data_science

• Data visualization 1

microbiome

• Hpcs 2015 talk
• 16s rrna tag paper
• Rarefy otu tables

software_installation

• Install r 3.4.0 and rstudio on ubuntu 16.04

publications

• Our latest oil degradation by microbial communities study is out in environmental microbiology
• New book chapter written by myself and charles greer is out now in comprehensive biotechnology 3rd edition
• Our oil degradation paper is out in isme j

pipelines, publications

• AmpliconTagger pipeline, 16S 18S ITS rRNA amplicons. Marker gene pipeline

Data vizualization

• Interactive sortable stacked bar plot in D3.js

Metagenomics, pipelines, publications

• Shallow shotgun metagenomics, shallow sequencing, sequencing depth

Metagenomics, pipelines,

• ShotgunMG pipeline now available as a Nextflow pipeline.